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Course content
Sections:
1
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Activities:
1
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Resources:
65
- 001 Welcome to the course HBlv gitir
- Announcements
- 002 Course structure aims and objectives NcCG gitir
- 003 Your first bioinformatic challenge D4sU gitir
- 004 Quiz 1 file an explanation O1DD gitir
- 006 Quiz 1 walkthrough undertaking a BLAST search FaPL gitir
- 007 Biology for differential gene expression analysis introduction nIgc gitir
- 008 What is this thing called bioinformatics nRig gitir
- 010 Overview of gene expression 7Qca gitir
- 011 Translation of genetic code theory cVdn gitir
- 012 Translation of genetic code practice iDIh gitir
- 014 Open Reading Frame translation walk through dFjY gitir
- 016 Gene structure and splicing m0gT gitir
- 018 Biology for differential gene expression analysis section summary gLyu gitir
- 019 Lab techniques for differential gene expression analysis intro Lflh gitir
- 020 Sequencing CGxO gitir
- 021 PCR seK6 gitir
- 022 Sanger sequencing Xnir gitir
- 023 Next generation sequencing vBfG gitir
- 025 Microarrays zbst gitir
- 026 Lab techniques for differential gene expression analysis section summary b8hJ gitir
- 027 First things first RStudio installation owT1 gitir
- 028 Differential gene expression fundamentals PreY gitir
- 029 Sample preparation for differential gene expression analysis eUgf gitir
- 030 Measuring gene expression with qPCR gnpx gitir
- 031 qPCR quantification of gene expression IDiI gitir
- 032 qPCR quiz part 1 intro 7XXH gitir
- 034 qPCR quiz walkthrough part 1 8IJv gitir
- 035 Experimental considerations for differential gene expression wWU8 gitir
- 036 Statistical considerations for differential gene expression v97R gitir
- 037 Spreadsheet qPCR analysis preserving variability of expression Nct1 gitir
- 038 Data analysis in RStudio XxFj gitir
- 042 Part 2 Q1 Walkthrough e0AZ gitir
- 045 Part 2 Q2 walkthrough gnVd gitir
- 048 Part 2 Q3 walkthrough Qr88 gitir
- 051 Part 2 Q4 walkthrough gBQg gitir
- 052 Intro to RNAseq qZy7 gitir
- 053 Analytical advantages of RNAseq and overview of RNAseq analysis pipeline MCZT gitir
- 055 RNAseq analysis pipeline YHao gitir
- 056 FastQC assessing the quality of sequencing library XEa2 gitir
- 059 FastQC exercise walkthrough do6a gitir
- 060 Alignment TUXEDO 0esW gitir
- 061 Alignment Rsubread esIQ gitir
- 065 Strict and less strict alignment walkthrough Az52 gitir
- 066 Strict and less strict alignment quiz walkthrough UCyX gitir
- 067 Transcriptome assembly TUXEDO 6bG9 gitir
- 068 Installing Cuff apps from TUXEDO toolkit lSdt gitir
- 071 Cuffcompare quiz walkthrough BS3g gitir
- 072 Read counts and FPKM RPKM ERAo gitir
- 074 Read counting TUXEDO poM9 gitir
- 076 RPKM normalization R 7Jsr gitir
- 080 Differential gene expression TUXEDO jXKS gitir
- 081 General Linear Models GLMs for differential gene expression analysis part 1 WpJe gitir
- 082 GLMs for differential gene expression analysis part 2 rBmF gitir
- 083 GLMs for differential gene expression analysis part 3 F9DQ gitir
- 084 GLMs for differential gene expression analysis part 4 aWGL gitir
- 086 Design matrices for GLMs aj2Z gitir
- 087 Further read count processing for differential expression analysis C6Oi gitir
- 088 Differential expression R s GLM limma edgeR u4kY gitir
- 091 Differential expression quiz walkthrough 0lzQ gitir
- 092 Differential expression RankProd KUX4 gitir
- 095 RankProd Quiz walkthrough r46i gitir
- 096 Pathway analysis ORA GSEA approaches oUMW gitir
- 101 Using pathway analysis in hypothesis free studies mqWB gitir
- 102 Visualization of gene expression data v8O3 gitir
- 107 Capstone project jZPL gitir